Since their pardon by the Guardians of the Universe back in UNTOLD TALES #515, the Fantastic Four have been freed. But that was before Batman became involved! Has he turned murderer, or is he being framed?
Tag: Fantastic Four
Untold Tales #664 Fantastic Four vs Bat-Mite
Untold Tales #621 Fantastic Four vs All-Star Squadron

Sorry, FF, but I think the Spectre alone will be able to sort you folks out.
Untold Tales #597 Green Lantern and Fantastic Four
Though the long standing rivalry between Green Lantern and the Fantastic Four was settled by the Guardians back in UNTOLD TALES #515, it looks like grudges are still being held.